One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/02/compare-matrices_2019-07-02.155022_IqzhwY/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/02/compare-matrices_2019-07-02.155022_IqzhwY/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift8 ; 110 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices

dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=8; ncol=23; --------wtcACACGTGTgaw- ; Alignment reference a 0 0 0 0 0 0 0 0 158 112 78 383 27 452 12 34 16 23 33 100 163 128 0 c 0 0 0 0 0 0 0 0 109 124 217 59 434 7 441 9 24 14 26 103 101 105 0 g 0 0 0 0 0 0 0 0 105 99 103 23 14 24 9 443 7 435 60 220 122 111 0 t 0 0 0 0 0 0 0 0 126 163 100 33 23 15 36 12 451 26 379 75 112 154 0

BAM8.DAP_M0154_AthalianaCistrome_shift9 (BAM8.DAP:M0154:AthalianaCistrome) 0.930 0.755 6.951 0.950 0.968 8 4 7 7 9 7.000 1
; dyads_test_vs_ctrl_m1 versus BAM8.DAP_M0154_AthalianaCistrome (BAM8.DAP:M0154:AthalianaCistrome); m=1/109; ncol2=15; w=13; offset=1; strand=D; shift=9; score= 7; ---------yCACACGTGysaam ; cor=0.930; Ncor=0.755; logoDP=6.951; NsEucl=0.950; NSW=0.968; rcor=8; rNcor=4; rlogoDP=7; rNsEucl=7; rNSW=9; rank_mean=7.000; match_rank=1 a 0 0 0 0 0 0 0 0 0 34 19 417 0 599 2 0 0 13 29 84 295 269 167 c 0 0 0 0 0 0 0 0 0 206 499 37 599 0 598 0 10 0 244 241 73 99 195 g 0 0 0 0 0 0 0 0 0 5 42 139 0 1 0 600 0 585 12 248 93 123 100 t 0 0 0 0 0 0 0 0 0 355 40 7 1 0 0 0 590 2 315 27 139 109 138

At4g36780.ampDAP_M0238_AthalianaCistrome_shift9 (At4g36780.ampDAP:M0238:AthalianaCistrome) 0.919 0.796 7.053 0.948 0.965 13 2 4 10 15 8.800 2
; dyads_test_vs_ctrl_m1 versus At4g36780.ampDAP_M0238_AthalianaCistrome (At4g36780.ampDAP:M0238:AthalianaCistrome); m=2/109; ncol2=14; w=13; offset=1; strand=D; shift=9; score= 8.8; ---------tCrCACGTGyRsat ; cor=0.919; Ncor=0.796; logoDP=7.053; NsEucl=0.948; NSW=0.965; rcor=13; rNcor=2; rlogoDP=4; rNsEucl=10; rNSW=15; rank_mean=8.800; match_rank=2 a 0 0 0 0 0 0 0 0 0 54 10 121 0 236 0 0 0 0 0 67 36 91 23 c 0 0 0 0 0 0 0 0 0 50 162 12 232 0 236 0 0 2 105 0 98 58 39 g 0 0 0 0 0 0 0 0 0 26 26 98 0 0 0 236 0 233 0 166 75 46 39 t 0 0 0 0 0 0 0 0 0 106 38 5 4 0 0 0 236 1 131 3 27 41 135

BZR1_MA0550.1_JASPAR_shift8 (BZR1:MA0550.1:JASPAR) 0.883 0.883 6.304 0.948 0.962 34 1 33 13 21 20.400 10
; dyads_test_vs_ctrl_m1 versus BZR1_MA0550.1_JASPAR (BZR1:MA0550.1:JASPAR); m=10/109; ncol2=14; w=14; offset=0; strand=D; shift=8; score= 20.4; --------mmkmCACGTGdvmm- ; cor=0.883; Ncor=0.883; logoDP=6.304; NsEucl=0.948; NSW=0.962; rcor=34; rNcor=1; rlogoDP=33; rNsEucl=13; rNSW=21; rank_mean=20.400; match_rank=10 a 0 0 0 0 0 0 0 0 63 55 30 49 0 147 6 0 0 6 42 41 42 81 0 c 0 0 0 0 0 0 0 0 60 47 20 66 153 2 147 0 0 5 0 53 61 39 0 g 0 0 0 0 0 0 0 0 30 27 52 26 0 0 0 153 0 142 39 43 22 0 0 t 0 0 0 0 0 0 0 0 0 24 51 12 0 4 0 0 153 0 72 16 28 33 0

BAM8.ampDAP_M0155_AthalianaCistrome_rc_shift9 (BAM8.ampDAP:M0155:AthalianaCistrome_rc) 0.936 0.761 0.290 0.953 0.972 6 3 103 5 7 24.800 15
; dyads_test_vs_ctrl_m1 versus BAM8.ampDAP_M0155_AthalianaCistrome_rc (BAM8.ampDAP:M0155:AthalianaCistrome_rc); m=15/109; ncol2=15; w=13; offset=1; strand=R; shift=9; score= 24.8; ---------ysACACGTGysaay ; cor=0.936; Ncor=0.761; logoDP=0.290; NsEucl=0.953; NSW=0.972; rcor=6; rNcor=3; rlogoDP=103; rNsEucl=5; rNSW=7; rank_mean=24.800; match_rank=15 a 0 0 0 0 0 0 0 0 0 78 13 428 0 588 0 0 0 26 5 104 305 280 141 c 0 0 0 0 0 0 0 0 0 188 397 44 590 0 590 0 0 0 289 174 72 114 166 g 0 0 0 0 0 0 0 0 0 7 161 81 0 2 0 590 0 564 0 268 87 129 132 t 0 0 0 0 0 0 0 0 0 317 19 37 0 0 0 0 590 0 296 44 126 67 151

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)													; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=8; ncol=23; --------wtcACACGTGTgaw- ; Alignment reference a 0 0 0 0 0 0 0 0 158 112 78 383 27 452 12 34 16 23 33 100 163 128 0 c 0 0 0 0 0 0 0 0 109 124 217 59 434 7 441 9 24 14 26 103 101 105 0 g 0 0 0 0 0 0 0 0 105 99 103 23 14 24 9 443 7 435 60 220 122 111 0 t 0 0 0 0 0 0 0 0 126 163 100 33 23 15 36 12 451 26 379 75 112 154 0
BAM8.DAP_M0154_AthalianaCistrome_shift9 (BAM8.DAP:M0154:AthalianaCistrome)	0.930	0.755	6.951	0.950	0.968	8	4	7	7	9	7.000	1	; dyads_test_vs_ctrl_m1 versus BAM8.DAP_M0154_AthalianaCistrome (BAM8.DAP:M0154:AthalianaCistrome); m=1/109; ncol2=15; w=13; offset=1; strand=D; shift=9; score= 7; ---------yCACACGTGysaam ; cor=0.930; Ncor=0.755; logoDP=6.951; NsEucl=0.950; NSW=0.968; rcor=8; rNcor=4; rlogoDP=7; rNsEucl=7; rNSW=9; rank_mean=7.000; match_rank=1 a 0 0 0 0 0 0 0 0 0 34 19 417 0 599 2 0 0 13 29 84 295 269 167 c 0 0 0 0 0 0 0 0 0 206 499 37 599 0 598 0 10 0 244 241 73 99 195 g 0 0 0 0 0 0 0 0 0 5 42 139 0 1 0 600 0 585 12 248 93 123 100 t 0 0 0 0 0 0 0 0 0 355 40 7 1 0 0 0 590 2 315 27 139 109 138
At4g36780.ampDAP_M0238_AthalianaCistrome_shift9 (At4g36780.ampDAP:M0238:AthalianaCistrome)	0.919	0.796	7.053	0.948	0.965	13	2	4	10	15	8.800	2	; dyads_test_vs_ctrl_m1 versus At4g36780.ampDAP_M0238_AthalianaCistrome (At4g36780.ampDAP:M0238:AthalianaCistrome); m=2/109; ncol2=14; w=13; offset=1; strand=D; shift=9; score= 8.8; ---------tCrCACGTGyRsat ; cor=0.919; Ncor=0.796; logoDP=7.053; NsEucl=0.948; NSW=0.965; rcor=13; rNcor=2; rlogoDP=4; rNsEucl=10; rNSW=15; rank_mean=8.800; match_rank=2 a 0 0 0 0 0 0 0 0 0 54 10 121 0 236 0 0 0 0 0 67 36 91 23 c 0 0 0 0 0 0 0 0 0 50 162 12 232 0 236 0 0 2 105 0 98 58 39 g 0 0 0 0 0 0 0 0 0 26 26 98 0 0 0 236 0 233 0 166 75 46 39 t 0 0 0 0 0 0 0 0 0 106 38 5 4 0 0 0 236 1 131 3 27 41 135
BZR1_MA0550.1_JASPAR_shift8 (BZR1:MA0550.1:JASPAR)	0.883	0.883	6.304	0.948	0.962	34	1	33	13	21	20.400	10	; dyads_test_vs_ctrl_m1 versus BZR1_MA0550.1_JASPAR (BZR1:MA0550.1:JASPAR); m=10/109; ncol2=14; w=14; offset=0; strand=D; shift=8; score= 20.4; --------mmkmCACGTGdvmm- ; cor=0.883; Ncor=0.883; logoDP=6.304; NsEucl=0.948; NSW=0.962; rcor=34; rNcor=1; rlogoDP=33; rNsEucl=13; rNSW=21; rank_mean=20.400; match_rank=10 a 0 0 0 0 0 0 0 0 63 55 30 49 0 147 6 0 0 6 42 41 42 81 0 c 0 0 0 0 0 0 0 0 60 47 20 66 153 2 147 0 0 5 0 53 61 39 0 g 0 0 0 0 0 0 0 0 30 27 52 26 0 0 0 153 0 142 39 43 22 0 0 t 0 0 0 0 0 0 0 0 0 24 51 12 0 4 0 0 153 0 72 16 28 33 0
BAM8.ampDAP_M0155_AthalianaCistrome_rc_shift9 (BAM8.ampDAP:M0155:AthalianaCistrome_rc)	0.936	0.761	0.290	0.953	0.972	6	3	103	5	7	24.800	15	; dyads_test_vs_ctrl_m1 versus BAM8.ampDAP_M0155_AthalianaCistrome_rc (BAM8.ampDAP:M0155:AthalianaCistrome_rc); m=15/109; ncol2=15; w=13; offset=1; strand=R; shift=9; score= 24.8; ---------ysACACGTGysaay ; cor=0.936; Ncor=0.761; logoDP=0.290; NsEucl=0.953; NSW=0.972; rcor=6; rNcor=3; rlogoDP=103; rNsEucl=5; rNSW=7; rank_mean=24.800; match_rank=15 a 0 0 0 0 0 0 0 0 0 78 13 428 0 588 0 0 0 26 5 104 305 280 141 c 0 0 0 0 0 0 0 0 0 188 397 44 590 0 590 0 0 0 289 174 72 114 166 g 0 0 0 0 0 0 0 0 0 7 161 81 0 2 0 590 0 564 0 268 87 129 132 t 0 0 0 0 0 0 0 0 0 317 19 37 0 0 0 0 590 0 296 44 126 67 151